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USC-OGP 2-DE database
Two-dimensional polyacrylamide gel electrophoresis database
USC-OGP 2-DE database
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Searching in 'USC-OGP 2-DE database' for entry
matching:
H2B1M_HUMAN
USC-OGP 2-DE database
:
H2B1M_HUMAN
H2B1M_HUMAN
General information about the entry
View entry in simple text format
Entry name
H2B1M_HUMAN
Primary accession number
Q99879
integrated into USC-OGP 2-DE database on
January 17, 2017 (release 1)
2D Annotations were last modified on
January 17, 2017 (version 1)
General Annotations were last modified on
April 5, 2017 (version 2)
Name and origin of the protein
Description
RecName: Full=Histone H2B type 1-M; AltName: Full=Histone H2B.e; Short=H2B/e;.
Gene name
Name=HIST1H2BM
Synonyms=H2BFE
Annotated species
Homo sapiens (Human) [TaxID:
9606
]
Taxonomy
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
References
[1]
2D GEL CHARACTERIZATION
Author 1., Author 2.
Submitted (Mar-2011) to Current
2D PAGE maps for identified proteins
How to interpret a protein
UVEAL_MELANOMA_3-10
{UVEAL MELANOMA 3-10}
Homo sapiens (Human)
map experimental info
UVEAL_MELANOMA_3-10
MAP LOCATIONS:
SPOT OGP-1329
:
pI=4.39; Mw=16914
Cross-references
UniProtKB/Swiss-Prot
Q99879; H2B1M_HUMAN.
2D PAGE maps for identified proteins
How to interpret a protein map
You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
Warning 1
: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
Warning 2
: the 2D PAGE map is built on demand. This may take some few seconds to be computed.
External data extracted from
UniProtKB/Swiss-Prot
Extracted from
UniProtKB/Swiss-Prot
, release:
0.0
Entry name
H2B1M_HUMAN
Primary accession number
Q99879
Secondary accession number(s)
Q6NWQ3
Sequence was last modified on
January 23, 2007 (version 3)
Annotations were last modified on
March 15, 2017 (version 162)
Name and origin of the protein
Description
RecName: Full=Histone H2B type 1-M; AltName: Full=Histone H2B.e; Short=H2B/e;
Gene name
Name=HIST1H2BM
Synonyms=H2BFE
Encoded on
Name=HIST1H2BM; Synonyms=H2BFE
Keywords
Acetylation
;
Chromosome
;
Complete proteome
;
Direct protein sequencing
;
DNA-binding
;
Glycoprotein
;
Isopeptide bond
;
Methylation
;
Nucleosome core
;
Nucleus
;
Phosphoprotein
;
Polymorphism
;
Reference proteome
;
Ubl conjugation
.
Copyright
Copyrighted by the UniProt Consortium, see
http://www.uniprot.org/help/license
. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBL
Z83738; CAB06033.1
; -; Genomic_DNA
EMBL
AF531296; AAN06696.1
; -; Genomic_DNA
EMBL
AL049822; CAB81655.1
; -; Genomic_DNA
EMBL
BC066244; AAH66244.1
; -; mRNA
EMBL
BC067486; AAH67486.1
; -; mRNA
EMBL
BC067487; AAH67487.1
; -; mRNA
EMBL
BC067488; AAH67488.1
; -; mRNA
EMBL
BC067489; AAH67489.1
; -; mRNA
CCDS
CCDS4629.1; -
; .
RefSeq
NP_003512.1; NM_003521.2
; .
UniGene
Hs.182432; -
; .
ProteinModelPortal
Q99879; -
; .
SMR
Q99879; -
; .
BioGrid
113938; 14
; .
IntAct
Q99879; 8
; .
MINT
MINT-3060064; -
; .
STRING
9606.ENSP00000352442; -
; .
iPTMnet
Q99879; -
; .
PhosphoSitePlus
Q99879; -
; .
SwissPalm
Q99879; -
; .
BioMuta
HIST1H2BM; -
; .
DMDM
7387742; -
; .
EPD
Q99879; -
; .
MaxQB
Q99879; -
; .
PaxDb
Q99879; -
; .
PeptideAtlas
Q99879; -
; .
PRIDE
Q99879; -
; .
TopDownProteomics
Q99879; -
; .
Ensembl
ENST00000621112; ENSP00000477907
; ENSG00000273703; .
GeneID
8342; -
; .
KEGG
hsa:8342; -
; .
UCSC
uc003njo.4; human
; .
CTD
8342; -
; .
DisGeNET
8342; -
; .
GeneCards
HIST1H2BM; -
; .
HGNC
HGNC:4750; HIST1H2BM
; .
HPA
HPA042205; -
; .
HPA
HPA043013; -
; .
HPA
HPA048671; -
; .
MIM
602802; gene
; .
neXtProt
NX_Q99879; -
; .
OpenTargets
ENSG00000273703; -
; .
PharmGKB
PA29125; -
; .
eggNOG
KOG1744; Eukaryota
; .
eggNOG
ENOG4111NV5; LUCA
; .
GeneTree
ENSGT00760000118976; -
; .
HOGENOM
HOG000231213; -
; .
HOVERGEN
HBG007774; -
; .
InParanoid
Q99879; -
; .
KO
K11252; -
; .
OMA
ANFMAVQ; -
; .
OrthoDB
EOG091G0XGD; -
; .
PhylomeDB
Q99879; -
; .
TreeFam
TF300212; -
; .
Reactome
R-HSA-1221632; Meiotic synapsis
; .
Reactome
R-HSA-171306; Packaging Of Telomere Ends
; .
Reactome
R-HSA-201722; Formation of the beta-catenin:TCF transactivating complex
; .
Reactome
R-HSA-212300; PRC2 methylates histones and DNA
; .
Reactome
R-HSA-2299718; Condensation of Prophase Chromosomes
; .
Reactome
R-HSA-2559580; Oxidative Stress Induced Senescence
; .
Reactome
R-HSA-2559582; Senescence-Associated Secretory Phenotype (SASP)
; .
Reactome
R-HSA-2559586; DNA Damage/Telomere Stress Induced Senescence
; .
Reactome
R-HSA-3214815; HDACs deacetylate histones
; .
Reactome
R-HSA-3214847; HATs acetylate histones
; .
Reactome
R-HSA-427359; SIRT1 negatively regulates rRNA Expression
; .
Reactome
R-HSA-427389; ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expression
; .
Reactome
R-HSA-427413; NoRC negatively regulates rRNA expression
; .
Reactome
R-HSA-5250924; B-WICH complex positively regulates rRNA expression
; .
Reactome
R-HSA-5334118; DNA methylation
; .
Reactome
R-HSA-5578749; Transcriptional regulation by small RNAs
; .
Reactome
R-HSA-5617472; Activation of anterior HOX genes in hindbrain development during early embryogenesis
; .
Reactome
R-HSA-5625886; Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3
; .
Reactome
R-HSA-5689880; Ub-specific processing proteases
; .
Reactome
R-HSA-5693565; Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks
; .
Reactome
R-HSA-5693571; Nonhomologous End-Joining (NHEJ)
; .
Reactome
R-HSA-5693607; Processing of DNA double-strand break ends
; .
Reactome
R-HSA-606279; Deposition of new CENPA-containing nucleosomes at the centromere
; .
Reactome
R-HSA-69473; G2/M DNA damage checkpoint
; .
Reactome
R-HSA-73728; RNA Polymerase I Promoter Opening
; .
Reactome
R-HSA-73777; RNA Polymerase I Chain Elongation
; .
Reactome
R-HSA-8866654; E3 ubiquitin ligases ubiquitinate target proteins
; .
Reactome
R-HSA-912446; Meiotic recombination
; .
Reactome
R-HSA-977225; Amyloid fiber formation
; .
GeneWiki
HIST1H2BM; -
; .
GenomeRNAi
8342; -
; .
PRO
PR:Q99879; -
; .
Proteomes
UP000005640; Chromosome 6
; .
Bgee
ENSG00000196374; -
; .
CleanEx
HS_HIST1H2BM; -
; .
Genevisible
Q99879; HS
; .
GO
GO:0005829; C:cytosol
; IDA:HPA; .
GO
GO:0070062; C:extracellular exosome
; IDA:UniProtKB; .
GO
GO:0005654; C:nucleoplasm
; IDA:HPA; .
GO
GO:0000786; C:nucleosome
; NAS:UniProtKB; .
GO
GO:0005634; C:nucleus
; IDA:UniProtKB; .
GO
GO:0003677; F:DNA binding
; NAS:UniProtKB; .
GO
GO:0006334; P:nucleosome assembly
; NAS:UniProtKB; .
GO
GO:0016567; P:protein ubiquitination
; TAS:Reactome; .
Gene3D
1.10.20.10; -
; 1; .
InterPro
IPR009072; Histone-fold
; .
InterPro
IPR007125; Histone_H2A/H2B/H3
; .
InterPro
IPR000558; Histone_H2B
; .
PANTHER
PTHR23428; PTHR23428
; 1; .
Pfam
PF00125; Histone
; 1; .
PRINTS
PR00621; HISTONEH2B
; .
SMART
SM00427; H2B
; 1; .
SUPFAM
SSF47113; SSF47113
; 1; .
PROSITE
PS00357; HISTONE_H2B
; 1; .
Gateways to other related servers
The World-2DPAGE Constellation
- Entry point to the world-wide 2-DPAGE resources.
World-2DPAGE Repository
- A public repository for gel-based proteomics data linked to protein identification published in the literature.
World-2DPAGE Portal
- A dynamic portal to query simultaneously world-wide gel-based proteomics databases.
SWISS-2DPAGE
- The Geneva Two-dimensional polyacrylamide gel electrophoresis database.
ExPASy
- The resources web server of the
Swiss Institute of Bioinformatics
Database constructed and maintained by
Angel Garcia
, using the
Make2D-DB II
package (
ver. 3.10.2
) from the
World-2DPAGE Constellation
of the
ExPASy web server
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